Ancient DNA Found Hidden Below Sea Floor
- 05.09.13
In the middle of the South Atlantic, there’s a patch of sea almost devoid of life. There are no birds, few fish, not even much plankton. But researchers report that they’ve found buried treasure under the empty waters: ancient DNA hidden in the muck of the sea floor, which lies 5000 meters below the waves.
The DNA, from tiny, one-celled sea creatures that lived up to 32,500 years ago, is the first to be recovered from the abyssal plains, the deep-sea bottoms that cover huge stretches of Earth. In a separate finding published this week, another research team reports teasing out plankton DNA that’s up to 11,400 years old from the floor of the much shallower Black Sea. The researchers say that the ability to retrieve such old DNA from such large stretches of the planet’s surface could help reveal everything from ancient climate to the evolutionary ecology of the seas.
“We have been able to show that the deep sea is the largest long-time archive of DNA, and a major window to study past biodiversity,” writes Pedro Martinez Arbizu, a deep-sea biologist of the German Centre for Marine Biodiversity Research in Wilhelmshaven and an author of the paper on South Atlantic DNA in an e-mail.
The new studies are “very exciting,” says micropaleontologist Bridget Wade of the University of Leeds in the United Kingdom, who was not connected to the research. Until now, it wasn’t clear “how far back in time you could take these DNA studies. … These records are telling you new information that wasn’t found in the fossil record.”
The South Atlantic team went looking for DNA in plugs of silt and clay coaxed out of the ocean floor hundreds of kilometers off the Brazilian coast. The researchers were after genetic material from two related groups of marine organisms, the foraminifera and the radiolarians. Both are single-celled, and both include many species with beautiful pearly shells that fossilize nicely, making them a favorite target of researchers studying the prehistoric oceans.
The researchers used special pieces of DNA specific to radiolarians and foraminifera to fish out DNA from those groups. Then they sequenced the DNA and compared the results to known foraminifera and radiolarian DNA sequences. Their analysis showed they’d found 169 foraminifera species and 21 radiolarian species, many of which were unknown. What’s more, many of the foraminifera species belonged to groups that don’t form fossils, the researchers report online today in Biology Letters.
Hacking the Human Brain: The Next Domain of Warfare
absolutely love this…
THIS IS SO STRANGELY SATISFYING TO WATCH I HAVE TO REBLOG IT AGAIN
Look at how satisfied that guy is. He’s like “Yeah I did science”
Crossing Many Rainbows: BUT SCIENCE!!1!!!1ONE!!!
So I’ve been sitting on this rant for a while and finally came around to having the energy to actually sit down and write it.
People like to hold up science as Perfection. As a bastion of truth and the only defense against all those silly, superstitious, religious kooks who believe in a fictional old wizard in the sky. That people who worship at the altar of science are the most (or only) rational human beings.
Well. Bullshit.
While science itself tells us so much about the universe we live in, while science never lies to us (though it often seems to contradict itself in ways we don’t fully understand yet); the people involved? Not so much.
Here’s the thing: The people who study science are no more or less flawed than the people who follow religion.
There are sane and rational people in the religious community. Like, for example, Reverend Phil Snider whose speech about LGBTQ rights at a city council meeting has been making the rounds on Tumblr lately. Hell, there’s an entire website dedicated to helping queer Christians find LGBTQ-friendly churches. There’s a group called Muslims for Progressive Values who’ve been gaining traction in the Muslim community with an eye on reevaluating homophobic and sexist traditions. There’s a Jewish congregation based out of New York City whose entire mission statement basically begins and ends with LGBTQ inclusiveness and celebrating diversity.
Trufax: The Westboro Baptist Church doesn’t speak for anyone but the Westboro Baptist Church.
But just like there are sane and rational religious people, there are also moronic assholes in the scientific community, that includes both professionals and people who just like to hold it up as a bastion of truth and honor and no nonsense or corruption ever.
They like to decry religion for committing horrible crimes against humanity.
While anyone whose taken a Psychology 101 class knows that experiments as recent as the 1970s are the reason professional ethics laws were put into place.
They like to call out religion for using God and the Bible as an excuse for horrifying acts on undeserving people.
While ignoring movements like eugenics which uses the excuse of genetics to remove “unwanted” elements from a population which has been used against minorities and the “emotionally disturbed,” poor, epileptic, and “feeble-minded” as recently as the 1960’s and ’70s.
People are blamed for using religion as an excuse for their prejudices.
When genetics has historically and still to this day been used as an excuse for racism. When deinstitutionalization of insane asylums in the US due to widespread overpopulation and abuse (ranging from wrongful institutionalization, neglect, to what amounts to physical and/or mental torture) didn’t start until the 1960’s and, due to resistance from the psychological community, stretched into the 1990’s. When, to this day, people are still fighting against ableism that assumes that people with disabilities or mental disorders are somehow less valuable as human beings.
People love to call out religious people worldwide for deliberately misinterpreting holy texts or ignoring large parts of it for their own personal benefit or to defend their own problematic views.
But then you have people like Dr. Andrew Wakefield who deliberately skewed and falsified scientific data to show that the MMR vaccine caused autism in children while allegedly developing a rival vaccination. Or the weight loss industry who deliberately ignores either large parts or entire scientific studies that have been conducted since the 1950’s that prove the entire industry is ineffective.
They love to declare how uneducated religious people are regarding their own holy texts.
And then they turn around and see a story with SCIENCE! in the headline and take it at face value without looking at the research themselves because IT’S SCIENCE SO IT MUST BE TRUE!
Because scientists have never lied about their data. Because scientists have never ignored their own ethical standards. Because scientists have never taken a scientific process and wrongly applied it to something completely unrelated. Because scientists have never discovered that previously scientifically proven facts were wrong.
Now my point isn’t that science is wrong and terrible and religious people are all upright, well-rounded citizens of the world who never ever lie.
I, myself, find chemistry, biology, and anatomy fascinating. I’m also a self-identified Catholic, despite being a queer feminist, and I also fully admit to having a long, celebrated history of lying (but not about that).
My point is that maybe all of these terrible things that we blame solely on religion aren’t actually religion’s fault. Maybe science vs. religion isn’t the problem.
Maybe the problem is just ignorant assholes.
^^^^^^
Casually reblogging truth
as a prowler of various academic institutions I encounter the casual contempt for religion everywhere in academia and it is depressing as shit precisely b/c it assumes & regurgitates this binary
as a denizen of various East Asian Studies departments I see the science vs religion binary all too often used as a thin veil for the West vs East one, i.e., an easy excuse to shit all over the East
said binary is also very often gendered, ref: rational menz vs superstitious wimmenfolk
basically fuck yr binaries from here to kingdom come
oops that was a religious reference WHAT NOW
This is a Good Post.
Also, let’s be real. A lot of self-professed atheists raised in the Western world, especially those coming from Christian families, aren’t really atheists - they’ve just traded worship of a deity for worship of Science, which is incredibly problematic for reasons mentioned above.
^^ ALL OF THIS. Forevers.
Tracking human migration by using the dissemination of Mycobacterium leprae [leprosy] across the world, based on SNP analysis:
The ovals indicate the country of origin and their distribution into four SNP types:
- yellow, type 1
- orange, type 2
- pink, type 3
- green, type 4
The colored arrows indicate the direction of human migrations predicted by, or inferred by the SNP analysis.
The white dotted arrows correspond to the migration routes of humans derived from genetic, archaeological, and anthropological studies [with the estimated time of migration in years].
Japanese artist Mika Aoki uses the ethereal quality of glass to get us to look differently at subjects like viruses, reproduction and the origins of life.
A Jacksonville researcher has developed a way of sewing up patients after hysterectomies that stands to reduce the risk of complications and simplify the tricky procedure for less-seasoned surgeons.
Oh, and he’s 14 years old.
Feel free to read that again.
Tony Hansberry II is a ninth-grader who, as it happens, will be presenting his findings today before an auditorium filled with doctors just like any of his board-certified - and decades older - colleagues would. He would say he was following in the footsteps of “Doogie Howser, M.D.” - if he weren’t too young to have heard of the television show.
Instead, he says that his remarkable accomplishments are merely steps toward his ultimate goal of becoming a University of Florida-trained neurosurgeon.
“I just want to help people and be respected, knowing that I can save lives,” said Tony, the son of a registered nurse mom and an African Methodist Episcopal church pastor dad.
To be sure, he had some help along the way, but, then again, most researchers do. The seeds of his project were planted last summer during his internship at the University of Florida’s Center for Simulation Education and Safety Research, based at Shands Jacksonville.
To understand why a teenager would be a hospital intern, it’s important to know that Tony is a student down the street from Shands at Darnell-Cookman Middle/High School, a magnet school geared toward all things medical. (Students, for example, master suturing by the eighth grade.)
At the simulation center, where medical residents and nurses practice on dummies, the normally shy student warmed up to the center’s administrative director, Bruce Nappi. In turn, Nappi, a problem-solver with a Massachusetts Institute of Technology aeronautics degree, found someone willing to learn.
One day, an obstetrics and gynecology professor asked the pair to help him figure out why no one was using a handy device that looks like a dipstick with clamps at the end, called an endo stitch, for sewing up hysterectomy patients. In other procedures, it proved its worth for its ability to grip pieces of thread and maneuverability.
What Tony did next is so complicated that the professor who suggested the project has to resort to a metaphor to explain it: “Instead of buttoning your shirt side to side, what about doing it up and down?” Brent Seibel said.
Here’s the literal explanation: The problem was that the endo stitch couldn’t clamp down properly to close the tube where the patient’s uterus had been. Tony figured that by suturing the tube vertically instead of horizontally, it could be done. And he was right.
Nappi said he came up with the idea but didn’t tell Tony, letting him come to the conclusion himself.
“It was truly independent that he figured it out,” Nappi said, adding that a representative for the device’s manufacturer told him that the endo stitch had never been used for that purpose.
Tony’s unpracticed hands were able to stitch three times faster with the endo stitch vs. the conventional needle driver. Further study may prove whether the same is true for more experienced surgeons, Seibel said.
In addition to cutting surgical time, the technique may help surgeons who don’t do many hysterectomies because it’s easier to use the endo stitch, he added.
Tony’s presentation today is part of UF’s medical education week, a time to spotlight teaching advancements, a hospital spokeswoman said.
Tony often speaks in the highly technical, dispassionate language of doctors. In that respect, he’s not the exception but the rule at Darnell-Cookman, said Angela TenBroeck, the school’s medical lead teacher. But he has surged ahead of others when it comes to surgical skills.
“I would put him up against a first-year med student,” she said. “He’s an outstanding young man, and I’m proud to have him representing us.”
Human heart before transplant
I often have to cut into the brain
New Voices highlights the best emerging talents on granta.com. The latest in the series is Henry Marsh, a brain surgeon turned memoirist, whose piece here describes an operation on the deeply buried pineal gland
I often have to cut into the brain and it is something I hate doing. With a pair of short-wave diathermy forceps I coagulate a few millimetres of the brain’s surface, turning the living, glittering pia arachnoid – the transparent membrane that covers the brain – along with its minute and elegant blood vessels, into an ugly scab. With a pair of microscopic scissors I then cut the blood vessels and dig downwards with a fine sucker. I look down the operating microscope, feeling my way through the soft white substance of the brain, trying to find the tumour. The idea that I am cutting and pushing through thought itself, that memories, dreams and reflections should have the consistency of soft white jelly, is simply too strange to understand and all I can see in front of me is matter. Nevertheless, I know that if I stray into the wrong area, into what neurosurgeons call eloquent brain, I will be faced with a damaged and disabled patient afterwards. The brain does not come with helpful labels saying ‘Cut here’ or ‘Don’t cut there’. Eloquent brain looks no different from any other area of the brain, so when I go round to the Recovery Ward after the operation to see what I have achieved, I am always anxious.
There are various ways in which the risk of doing damage can be reduced. There is a form of GPS for brain surgery called Computer Navigation where, instead of satellites orbiting the Earth, there are infrared cameras around the patient’s head which show the surgeon on a computer screen where his instruments are on the patient’s brain scan. You can operate with the patient awake The idea that … memories, dreams and reflections should have the consistency of soft white jelly, is simply too strange to understand under local anaesthetic: the eloquent areas of the brain can then be identified by stimulating the brain with an electrode and by giving the patient simple tasks to perform so that one can see if one is causing any damage as the operation proceeds. And then there is skill and experience and knowing when to stop. Quite often one must decide that it is better not to start in the first place and declare the tumour inoperable. Despite these methods, however, much still depends on luck, both good and bad. As I become more and more experienced, it seems that luck becomes ever more important.
I had a patient who had a tumour of the pineal gland. The dualist philosopher Descartes, who argued that mind and brain are entirely separate entities, placed the human soul in the pineal gland. It was here, he said, that the material brain in some magical and mysterious way communicated with the mind and with the immaterial soul. I wonder what he would have said if he could have seen my patients looking at their own brains on a video monitor, as some of them do when I operate under local anaesthetic.
Pineal tumours are very rare. They can be benign and they can be malignant. The benign ones do not necessarily need treatment. The malignant ones are treated with radiotherapy and chemotherapy but can prove fatal nevertheless. In the past they were considered to be inoperable but with modern microscopic neurosurgery this is no longer the case: it is usually now considered necessary to operate at least to obtain a biopsy – to remove a small part of the tumour for a precise diagnosis of the type so that you can then decide how best to treat it. The biopsy result will tell you whether to remove all of the tumour or whether to leave most of it in place, and whether the patient needs radiotherapy and chemotherapy. Since the pineal is buried deep in the middle of the brain the operation is, as surgeons say, a technical challenge; neurosurgeons look with awe and excitement at brain scans showing pineal tumours, like mountaineers looking up at a great peak that they hope to climb. To make matters worse, this particular patient – a very fit and athletic man in his thirties who had developed severe headaches as the tumour obstructed the normal circulation of cerebro-spinal fluid around his brain – had found it very hard to accept that he had a life-threatening illness and that his life was now out of his control. I had had many anxious conversations and phone calls with him over the days before the operation. I explained that the risks of the surgery, which included death or a major stroke, were ultimately less than the risks of not operating. He laboriously typed everything I said into his smartphone, as if taking down the long words – obstructive hydrocephalus, endoscopic ventriculostomy, pineocytoma, pineoblastoma – would somehow put him back in charge and save him. Anxiety is contagious – it is one of the reasons surgeons must distance themselves from their patients – and his anxiety, combined with my feeling of profound failure about an operation I had carried out a week earlier meant that I faced the prospect of operating upon him with dread. I had seen him the night before the operation. When I see my patients the night before surgery I try not to dwell on the risks of the operation ahead, which I will already have discussed in detail at an earlier meeting. His wife was sitting beside him, looking quite sick with fear.
Throughout the ages, farting (flatulation) has generated jokes, folklore, etiquette, and a few legal sanctions, but little research. The legendary Hippocrates (460–377 BCE) considered the medical affliction of too much gas in The Winds, advising, “It is better to let it pass with noise than to be intercepted and accumulated internally” (1.24–25). The topic has been treated more often in popular fare, including the humorous writings of Geoffrey Chaucer, Benjamin Franklin, and Mark Twain. Fart jokes earn a place in the opening scene of Aristophanes’ The Clouds and the memorable closing scene of “The Miller’s Tale” in Chaucer’s The Canterbury Tales. Although passing gas is usually considered ill-mannered, it’s usually laughed off as a minor offense. But this has not always been the case. The Roman Empire once had laws against farting in public places, a sanction that must have caused a lot of fanning and finger-pointing in the Forum. The law was lifted during the reign of Claudius, one of the most flatulent of emperors.
Consider the sad fate of Pu Sao of the Tikopia in Polynesia, who was so overcome with shame after farting in the presence of the chief that he committed suicide by climbing a palm tree and impaling himself through the rectum with a sharply pointed branch. Sanctions are less severe among the Chagga of Tanzania, but feminists have a lot of work to do there. If a husband breaks wind, the wife must pretend that it was really she who discharged, and she must submit to scolding about it. Failure to accept responsibility can cost the negligent wife three barrels of beer.
Robert R. Provine, Author, Curious Behavior. Via Salon, Passing gas is an art and science
FJP: I don’t post just because I’m puerile, but because this is actually a fascinating read about farts throughout the ages, from a famed French performer who dominated the stage with gassy butt tricks, to the thoughts of St. Augustine, Hippocrates, Aristophanes, Mark Twain and Chaucer, to the science of flatulence, human and otherwise. Well worth the read. — Michael
(via futurejournalismproject)
FART SCIENCE IS A THING.
(via wilwheaton)





